Plot leapR pathway bars (single panel) — plot_leapr

This plotting helper expects leapR generated results to plot. It will use BH_pvalue if present, otherwise pvalue.

Usage

plot_leapr_bar(
  res_df,
  title = NULL,
  top_n = 15,
  star_thresholds = c(0.05, 0.01, 0.001),
  wrap = 42,
  max_stars = 5L,
  fill_sig = "#2C7BB6",
  fill_ns = "#BFD7FF",
  outline = NA,
  axis_text_y_size = 8,
  axis_text_x_size = 9
)

Arguments

res_df: A leapR df containing BH_pvalue (or pvalue) and a pathway/term label column.
title: Plot title.
top_n: Number of top pathways/genes to display.
star_thresholds: list of numeric significance thresholds for star annotations.
wrap: Wrap width for pathway labels (helps formatting).
max_stars: Maximum number of stars to draw per bar (default 5).
fill_sig: Fill color for significant bars
fill_ns: Fill color for non-significant bars.
outline: Bar border color.
axis_text_y_size: Font size for y-axis (category) labels.
axis_text_x_size: Font size for x-axis (numeric) labels.

Value

A ggplot2 object (or NULL if nothing to plot).