enrichment_in_relationships function description is a general way to
determine if a pathway
is enriched in relationships (interactions, correlation) between its members
# access through leapr wrapper
Usage
enrichment_in_relationships(
geneset,
relationships,
idmap = NA,
silence_try_errors = TRUE
)
Arguments
- geneset
List of pathways in gmt format
- relationships
table of relationship information, e.g. correlation
- idmap
list of identifiers to use for mapping, the names of the items
should agree with names of features in matrix
- silence_try_errors
boolean to silence errors
Value
table of enrichment statistics