.. _publications:

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Publications
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**Joslyn, Cliff A; Aksoy, Sinan; Callahan, Tiffany J; Hunter, LE; Jefferson, Brett; Praggastis, Brenda; Purvine, Emilie AH; Tripodi, Ignacio J: (2021)** `Hypernetwork Science: From Multidimensional Networks to Computational Topology <https://doi.org/10.1007/978-3-030-67318-5_25>`_, in: `Unifying Themes in Complex systems X: Proc. 10th Int. Conf. Complex Systems*, ed. D. Braha et al., pp. 377-392, Springer, https://doi.org/10.1007/978-3-030-67318-5_25


**Aksoy, Sinan G; Joslyn, Cliff A; Marrero, Carlos O; Praggastis, B; Purvine, Emilie AH: (2020)** "Hypernetwork Science via High-Order Hypergraph Walks" , *EPJ Data Science*, v. **9**:16, 
https://doi.org/10.1140/epjds/s13688-020-00231-0 

**Aksoy, Sinan G; Hagberg, Aric; Joslyn, Cliff A; Kay, Bill; Purvine, Emilie; Young, Stephen J: (2022)** "Models and Methods for Sparse (Hyper)Network Science in Business, Industry, and Government", *Notices of the AMS*, v. **69**:2, pp. 287-291, 
https://doi.org/10.1090/noti2424 

**Feng, Song; Heath, Emily; Jefferson, Brett; Joslyn, CA; Kvinge, Henry; McDermott, Jason E; Mitchell, Hugh D; Praggastis, Brenda; Eisfeld, Amie J; Sims, Amy C; Thackray, Larissa B; Fan, Shufang; Walters, Kevin B; Halfmann, Peter J; Westhoff-Smith, Danielle; Tan, Qing; Menachery, Vineet D; Sheahan, Timothy P; Cockrell, Adam S; Kocher, Jacob F; Stratton, Kelly G; Heller, Natalie C; Bramer, Lisa M; Diamond, Michael S; Baric, Ralph S; Waters, Katrina M; Kawaoka, Yoshihiro; Purvine, Emilie: (2021)** "Hypergraph Models of Biological Networks to Identify Genes Critical to Pathogenic Viral Response", in: *BMC Bioinformatics*, v. **22**:287, 
https://doi.org/10.1186/s12859-021-04197-2

**Myers, Audun; Joslyn, Cliff A; Kay, Bill; Purvine, EAH; Roek, Gregory; Shapiro, Madelyn: (2023)** "Topological Analysis of Temporal Hypergraphs", in: *Proc. Wshop. on Analysis of the Web Graph (WAW 2023)*  https://arxiv.org/abs/2302.02857 and 
*2022 SIAM Conf. on Mathematics of Data Science*, https://www.siam.org/Portals/0/Conferences/MDS/MDS22/MDS22_ABSTRACTS.pdf

**Joslyn, Cliff A; Aksoy, Sinan; Arendt, Dustin; Firoz, J; Jenkins, Louis; Praggastis, Brenda; Purvine, Emilie AH; Zalewski, Marcin: (2020)** "Hypergraph Analytics of Domain Name System Relationships", in: *17th Wshop. on Algorithms and Models for the Web Graph (WAW 2020), Lecture Notes in Computer Science*, v. **12901**, ed. Kaminski, B et al., pp. 1-15, Springer, 
https://doi.org/10.1007/978-3-030-48478-1_1 

**Hayashi, Koby; Aksoy, Sinan G; Park, CH; and Park, Haesun: (2020) "Hypergraph Random Walks, Laplacians, and Clustering"**, in:**Proc. 29th ACM Int. Conf. Information and Knowledge Management (CIKM 2020)**, pp. 495-504, ACM, New York,**
https://doi.org/10.1145/3340531.3412034

**Kay, WW; Aksoy, Sinan G; Baird, Molly; Best, DM; Jenne, Helen; Joslyn, CA; Potvin, CD; Roek, Greg; Seppala, Garrett; Young, Stephen; Purvine, Emilie: (2022)** "Hypergraph Topological Features for Autoencoder-Based Intrusion Detection for Cybersecurity Data", *ML4Cyber Wshop., Int. Conf. Machine Learning 2022*,
https://icml.cc/Conferences/2022/ScheduleMultitrack?event=13458#collapse20252

**Liu, Xu T; Firoz, Jesun; Lumsdaine, Andrew; Joslyn, CA; Aksoy, Sinan; Amburg, Ilya; Praggastis, Brenda; Gebremedhin, Assefaw: (2022)** "High-Order Line Graphs of Non-Uniform Hypergraphs: Algorithms, Applications, and Experimental Analysis", *36th IEEE Int. Parallel and Distributed Processing Symp. (IPDPS 22)*,
https://ieeexplore.ieee.org/document/9820632

**Liu, Xu T; Firoz, Jesun; Lumsdaine, Andrew; Joslyn, CA; Aksoy, Sinan; Praggastis, Brenda; Gebremedhin, Assefaw: (2021)** "Parallel Algorithms for Efficient Computation of High-Order Line Graphs of Hypergraphs", in: *2021 IEEE 28th International Conference on High Performance Computing, Data, and Analytics (HiPC 2021)*,
https://doi.ieeecomputersociety.org/10.1109/HiPC53243.2021.00045